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Released:

Allows reading Bio-Rad *.1sc image/analysis files.

Project description

Python Package to read, parse, convert *.1sc files generated by Bio-RadQuantity One software.

• Image Lab Bio-Rad: Anyone can download the software for free simply by creating a Bio-Rad account. Mac/Windows: A security license costs $3,705. UN-SCAN-IT gel Silk Software: $445 (perpetual) or $129 (annual); demo version allows you to try it with a couple of your own images. Mac/Windows: No: CLIQS Totallab: GBP850; the company can arrange a.
• Download imagelab 6.0 for free. Education software downloads - ImageLab6.0 by Bio-Rad Laboratories and many more programs are available for instant and free download.

Documentation at: http://biorad1sc-reader.readthedocs.io/

An optional dependency: numpy. If present, image operations inbiorad1sc_reader will run 4x to 5x faster.

Also installs the following command-line executables:

Bio Rad Image Lab Download Mac Download

bio1sc2tiff

converts *.1sc files to *.tif images. (type bio1sc2tiff --help)

bio1scmeta

reports all metadata contained in each *.1sc file to a text file.(type bio1scmeta --help)

bio1scread

reports details on a *.1sc file’s internal structure.(type bio1scread --help)

Current Status

• “Alpha” quality software
  • API subject to change
  • No known problems in operation.
• Reading Image Data OK
• Saving Image from file to new TIFF file OK
  • Reader.save_img_as_tiff()
  • Reader.save_img_as_tiff_sc()
• Reading all metadata OK
  • Reader.get_metadata()
  • Reader.get_metadata_compact()
• Reading certain image Metadata from Data Block 7 OK
  • Reader.get_img_summary()
  • Includes:
    • Scanner Name: <Scanner Name>
    • Number of Pixels: (<img_size_x> x <img_size_y>)
    • Image Area: (<img_size_x> mm x <img_size_y> mm)
    • Scan Memory Size: <total_img_size> Kb
    • Old file name: <old_file_name>
    • New file name: <new_file_name>
    • <File Directory>
    • New Image Acquired
    • Save As…
    • Quantity One <Quantity One Version String>
• python2 (lack of) support
  • I’m currently unwilling to support python2
  • If you’d like python2 support, it’s DIY. :)

File Format Documentation

Related Info

• Bio-Rad Image Lab Software
  • For Mac, only version 5.x supports 1sc files. (Click on the Download tab to find it.)
• Bio-Rad Quantity One Software
  • Generates 1sc files from Bio-Rad instruments.

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0.7.0

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0.5.1

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Image Lab For Mac

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Hi All,

It was a pleasure working with you today. Any feedback concerning the training is welcome!

This message includes the link to download ImageLab 5.2 and two papers that I recently published (June 2013 and March 2014) in Molecular Biotechnology (http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3840294/) and BioMed Research International (http://www.hindawi.com/journals/bmri/2014/361590/) on how to produce quantitative western blots. I also recorded two videos that will walk you through each article and the links are below “Western Blot Tutorial”. I hope this demo and associated training gives you a good perspective on our technology and also on the support that you can expect when you are part of our customer base.

Our new software tool, ImageLab 5.2 will allow you to perform sophisticated densitometric analysis of your gels and blots with this very simple and user-friendly software. The software is NOT license protected so does not require a USB security key to run which gives you the freedom to use it on any PC or MAC computer. The software will load images generated with our VersaDoc, ChemiDoc, GelDoc, Pharos as well as our newest imager, the ChemiDoc Touch.

Image Lab v6.0.1 build 34

This version has a new Normalization tool which is very useful for western blot analysis. I also recorded some training videos for you to learn how to quickly use the software, and how to do quantitative gel and blot analysis. The video links are as follows:

Image Analysis: http://youtu.be/0ZWUrehRNKA
Multifluorescent with Stain Free Normalization: https://sas.elluminate.com/site/external/jwsdetect/nativeplayback.jnlp?sid=voffice&psid=2012-07-26.0900.M.9EF814CC7FF199166934248F198E09.vcr
Chemi with Single Protein Normalization: https://sas.elluminate.com/site/external/jwsdetect/nativeplayback.jnlp?sid=voffice&psid=2012-07-26.1020.M.9EF814CC7FF199166934248F198E09.vcr

You need Java on your computers and your browser will probably give you a security message at the top that you need to click on to download the file to your computer so you can watch the video. Hopefully, it will be a simple process to view the videos and let me know if you have any problems.

Western Blot Tutorial – BMRI: http://youtu.be/iCgmeufGM2g
Western Blot Tutorial – Mol Bio: http://cbt20.wordpress.com/2013/06/13/quantitative-western-blotting/
Droplet Digital PCR: http://cbt20.wordpress.com/category/droplet-digital-pcr-bio-rad-tutorial/

On a different topic, we have recently launched our new chemiluminescent detection reagent – Clarity Western ECL Substrate (see attached)! This product is designed to provide high performance blot detection at an affordable price for every lab. Also some info about our TGX Stain-Free FastCCast Acrylamide kits.

Best Regards,

Sean Taylor
Field Application Specialist
E: sean_taylor@bio-rad.com

For All Technical Support
T: 1-800-424-6723
E: tech_canada@bio-rad.com